HuBMAP-wide data products contain consolidated data for all datasets of a particular assay type and tissue, across all datasets, assay variants, and data providers. RNA-seq data products are added as both raw and processed versions: 'raw' features gene expression count matrices from the HuBMAP RNA-seq pipeline, and 'processed' versions are the results of secondary analysis (normalization, filtering, dimensionality reduction, clustering) applied to the raw matrix.
| Tissue Type | Creation Time | Assay Type | Number of Datasets | Total Raw Cells | Number Raw Cell Types | Total Processed Cells | Number Processed Cell Types | Raw Data Product Download | Processed Data Product Download | Shiny App | (All Versions) |
|---|---|---|---|---|---|---|---|---|---|---|---|
Fallopian Tube (Left) |
Nov. 22, 2024, 9:31 p.m. | multiome-rna-atac | 4 | 32329 | NA | 17397 | NA | Raw h5mu | Processed h5mu | NA | All versions of Fallopian Tube (Left) |
|
Fallopian Tube (Left) |
Nov. 13, 2024, 2:53 p.m. | rna-seq | 11 | 34935 | NA | 14668 | NA | Raw H5AD | Processed H5AD | Shiny App | All versions of Fallopian Tube (Left) |